Building a second application to app store question

The company I work for already has one application on the app store and has requested that a second application be added with the same code, but under a different logo, name, etc. I have gone into the build settings and removed any reference to the naming of the other application and have removed the previous name throughout the code. 

However, when I go to deliver the new application through the application loader, the “Deliver Your App” screen still shows the main application that I have been delivering for years now (and it subsequently fails to upload because it’s the wrong application build ID, etc). 

What is the process to get the application loader to properly identify the application so I can send the right application to my apple developer account for upload/approval? Surely I am missing something, but cannot seem to figure out what it is. 

Thanks for any input. 

Have you gone into the provisioning portal and created a new AppID and generated provisioning profiles for the new app?

Have you gone into iTunes Connect and setup a new app?

Rob

Have you gone into the provisioning portal and created a new AppID and generated provisioning profiles for the new app?

Have you gone into iTunes Connect and setup a new app?

Rob